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beagle-software
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beagle-software [2016/11/14 11:59] joguya |
beagle-software [2019/09/29 19:35] aorth |
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| ====== Beagle ====== | ====== Beagle ====== | ||
| - | |||
| BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Latest Version: | + | * Latest Version: |
| * Added: August, 2015 | * Added: August, 2015 | ||
| - | * Updated: | + | * Updated: |
| * Link: https:// | * Link: https:// | ||
| | | ||
| Line 13: | Line 12: | ||
| See which versions of beagle are available: | See which versions of beagle are available: | ||
| - | < | + | < |
| - | </ | + | |
| - | Load beagle | + | Load one version into your environment: |
| - | < | + | < |
| + | |||
| + | Beagle is not useful by itself, but you can use it to speed up [[https:// | ||
| ===== Installation ====== | ===== Installation ====== | ||
| - | |||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ cd /tmp | + | $ wget https:// |
| - | $ git clone --depth=1 | + | $ tar xf v3.1.2.tar.gz |
| - | $ cd beagle-lib/ | + | $ cd beagle-lib-3.1.2 |
| - | $ git checkout beagle_release_2_1_2 | + | $ scl enable devtoolset-7 bash |
| - | $ scl enable devtoolset-2 bash | + | $ ./ |
| - | $ module load java/1.8 | + | $ ./configure --prefix=/ |
| - | $ ./ | + | $ sudo mkdir -p / |
| - | $ sudo mkdir / | + | $ sudo chown aorth / |
| - | $ sudo chown joguya: | + | |
| - | $ ./configure --prefix=/ | + | |
| $ make install | $ make install | ||
| - | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
| - | </ | + | |
beagle-software.txt · Last modified: 2019/09/29 19:35 by aorth
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