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beagle-software [2016/11/14 14:59]
joguya
beagle-software [2019/09/29 22:35]
aorth
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 ====== Beagle ====== ====== Beagle ======
- 
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
  
 ===== Information ===== ===== Information =====
  
-  * Latest Version: ​2.1.2+  * Latest Version: ​3.1.2
   * Added: August, 2015   * Added: August, 2015
-  * Updated: ​November2016+  * Updated: ​September2019
   * Link: https://​github.com/​beagle-dev/​beagle-lib   * Link: https://​github.com/​beagle-dev/​beagle-lib
   ​   ​
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 See which versions of beagle are available: See which versions of beagle are available:
-<​code>​$ module avail beagle +<​code>​$ module avail beagle</​code>​
-</​code>​+
  
-Load beagle +Load one version into your environment:​ 
-<​code>​$ module load beagle/2.1.2</​code>​+<​code>​$ module load beagle/3.1.2</​code>​ 
 + 
 +Beagle is not useful by itself, but you can use it to speed up [[https://​hpc.ilri.cgiar.org/​beast-software|BEAST]].
  
 ===== Installation ====== ===== Installation ======
- 
 Notes from the sysadmin during installation:​ Notes from the sysadmin during installation:​
  
-<​code>​ +<​code>​$ cd /tmp 
-$ cd /tmp +wget https://​github.com/​beagle-dev/​beagle-lib/​archive/​v3.1.2.tar.gz 
-git clone --depth=1 ​https://​github.com/​beagle-dev/​beagle-lib.git +$ tar xf v3.1.2.tar.gz ​ 
-$ cd beagle-lib+$ cd beagle-lib-3.1.2 
-$ git checkout beagle_release_2_1_2 +$ scl enable devtoolset-bash 
-$ scl enable devtoolset-bash +$ ./​autogen.sh 
-$ module load java/1.8 +./configure --prefix=/​export/​apps/​beagle/​3.1.2 
-$ ./​autogen.sh  +$ sudo mkdir -p /​export/​apps/​beagle/​3.1.2 
-sudo mkdir /​export/​apps/​beagle/​2.1.2/ +sudo chown aorth /​export/​apps/​beagle/​3.1.2
-$ sudo chown joguya:​joguya ​/​export/​apps/​beagle/​2.1.2/ +
-./configure --prefix=/​export/​apps/​beagle/​2.1.2/+
 $ make install $ make install
-$ sudo chown -R root:root /​export/​apps/​beagle/​2.1.2+$ sudo chown -R root:root /​export/​apps/​beagle/​3.1.2</​code>​
-</​code>​+
beagle-software.txt · Last modified: 2019/09/29 22:35 by aorth