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beagle-software

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Beagle

BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.

Information

Usage

See which versions of beagle are available:

$ module avail beagle

Load beagle

$ module load beagle/2.1.2

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git
$ cd beagle-lib/
$ git checkout beagle_release_2_1_2
$ scl enable devtoolset-2 bash
$ module load java/1.8
$ ./autogen.sh 
$ sudo mkdir /export/apps/beagle/2.1.2/
$ sudo chown joguya:joguya /export/apps/beagle/2.1.2/
$ ./configure --prefix=/export/apps/beagle/2.1.2/
$ make install
$ sudo chown -R root:root /export/apps/beagle/2.1.2/
beagle-software.txt · Last modified: 2016/11/14 14:59 by joguya