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bcftools-software [2017/12/24 18:01]
aorth
bcftools-software [2018/06/01 22:17] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.6+  * Latest Version: 1.8
   * Added: September, 2015   * Added: September, 2015
-  * Updated: ​December2017+  * Updated: ​June2018
   * Link: https://​samtools.github.io/​bcftools   * Link: https://​samtools.github.io/​bcftools
  
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 Load one version into your environment:​ Load one version into your environment:​
-<​code>​$ module load bcftools/1.6</​code>​+<​code>​$ module load bcftools/1.8</​code>​
  
 ===== Installation ====== ===== Installation ======
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 <​code>​$ cd /tmp <​code>​$ cd /tmp
-$ wget https://​github.com/​samtools/​bcftools/​releases/​download/​1.6/​bcftools-1.6.tar.bz2 +$ wget https://​github.com/​samtools/​bcftools/​releases/​download/​1.8/​bcftools-1.8.tar.bz2 
-$ tar xf bcftools-1.6.tar.bz2  +$ tar xf bcftools-1.8.tar.bz2 
-$ cd bcftools-1.6 +$ cd bcftools-1.8 
-$ ./configure --prefix=/​export/​apps/​bcftools/​1.6 +$ ./configure --prefix=/​export/​apps/​bcftools/​1.8 --with-htslib=/​export/​apps/​htslib/​1.8 
-$ make all all-htslib +$ make 
-$ sudo mkdir /​export/​apps/​bcftools/​1.6 +$ sudo mkdir /​export/​apps/​bcftools/​1.8 
-$ sudo chown aorth /​export/​apps/​bcftools/​1.6 +$ sudo chown -R aorth:aorth /​export/​apps/​bcftools/​1.8 
-$ make install ​install-htslib +$ make install 
-$ sudo chown -R root:root /​export/​apps/​bcftools/​1.6</​code>​+$ sudo chown -R root:root /​export/​apps/​bcftools/​1.8</​code>​ 
 + 
 +This links bcftools against a system-wide installation of htslib/1.8.
bcftools-software.txt · Last modified: 2018/06/01 22:17 by aorth