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bcftools-software [2017/12/24 15:01]
aorth
bcftools-software [2021/09/05 10:51]
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.6+  * Latest Version: 1.13
   * Added: September, 2015   * Added: September, 2015
-  * Updated: December2017+  * Updated: September2021
   * Link: https://samtools.github.io/bcftools   * Link: https://samtools.github.io/bcftools
  
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 <code>$ module avail bcftools</code> <code>$ module avail bcftools</code>
  
-Load one version into your environment: +Load one version into your environment and run it
-<code>$ module load bcftools/1.6</code>+<code>$ module load bcftools/1.13 
 +$ bcftools</code>
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/samtools/bcftools/releases/download/1.6/bcftools-1.6.tar.bz2 +$ wget https://github.com/samtools/bcftools/releases/download/1.13/bcftools-1.13.tar.bz2 
-$ tar xf bcftools-1.6.tar.bz2  +$ tar xf bcftools-1.13.tar.bz2  
-$ cd bcftools-1.6 +$ cd bcftools-1.13 
-$ ./configure --prefix=/export/apps/bcftools/1.6 +# install a newer compiler from Red Hat software collections 
-$ make all all-htslib +$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ 
-$ sudo mkdir /export/apps/bcftools/1.6 +$ scl enable devtoolset-7 bash 
-$ sudo chown aorth /export/apps/bcftools/1.6 +$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/bcftools/1.13 --with-htslib=/export/apps/htslib/1.13 
-$ make install install-htslib +$ make 
-sudo chown -R root:root /export/apps/bcftools/1.6</code>+$ sudo mkdir -p /export/apps/bcftools/1.13 
 +$ sudo chown aorth /export/apps/bcftools/1.13 
 +$ make install 
 +sudo chown -R root:root /export/apps/bcftools/1.13</code> 
 + 
 +This links bcftools against a system-wide installation of htslib/1.13.
bcftools-software.txt · Last modified: 2021/09/05 10:51 by aorth