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bcftools-software [2017/12/24 15:01]
aorth
bcftools-software [2018/06/01 19:17]
aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.6+  * Latest Version: 1.8
   * Added: September, 2015   * Added: September, 2015
-  * Updated: December2017+  * Updated: June2018
   * Link: https://samtools.github.io/bcftools   * Link: https://samtools.github.io/bcftools
  
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 Load one version into your environment: Load one version into your environment:
-<code>$ module load bcftools/1.6</code>+<code>$ module load bcftools/1.8</code>
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/samtools/bcftools/releases/download/1.6/bcftools-1.6.tar.bz2 +$ wget https://github.com/samtools/bcftools/releases/download/1.8/bcftools-1.8.tar.bz2 
-$ tar xf bcftools-1.6.tar.bz2  +$ tar xf bcftools-1.8.tar.bz2 
-$ cd bcftools-1.6 +$ cd bcftools-1.8 
-$ ./configure --prefix=/export/apps/bcftools/1.6 +$ ./configure --prefix=/export/apps/bcftools/1.8 --with-htslib=/export/apps/htslib/1.8 
-$ make all all-htslib +$ make 
-$ sudo mkdir /export/apps/bcftools/1.6 +$ sudo mkdir /export/apps/bcftools/1.8 
-$ sudo chown aorth /export/apps/bcftools/1.6 +$ sudo chown -R aorth:aorth /export/apps/bcftools/1.8 
-$ make install install-htslib +$ make install 
-$ sudo chown -R root:root /export/apps/bcftools/1.6</code>+$ sudo chown -R root:root /export/apps/bcftools/1.8</code> 
 + 
 +This links bcftools against a system-wide installation of htslib/1.8.
bcftools-software.txt · Last modified: 2021/09/05 10:51 by aorth