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bcftools-software [2017/02/05 11:42]
joguya [Installation]
bcftools-software [2021/02/21 09:50]
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.3.1+  * Latest Version: 1.11
   * Added: September, 2015   * Added: September, 2015
-  * Updated: February, 2017+  * Updated: February, 2021
   * Link: https://samtools.github.io/bcftools   * Link: https://samtools.github.io/bcftools
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of bcftools which are available ===+See versions of bcftools which are available:
 <code>$ module avail bcftools</code> <code>$ module avail bcftools</code>
 +
 +Load one version into your environment:
 +<code>$ module load bcftools/1.11</code>
  
 ===== Installation ====== ===== Installation ======
Line 18: Line 21:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget -qO- https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2 | tar xjv +$ wget https://github.com/samtools/bcftools/releases/download/1.11/bcftools-1.11.tar.bz2 
-cd bcftools-1.3.1 +tar xf bcftools-1.11.tar.bz2  
-scl enable devtoolset-3 bash +cd bcftools-1.11 
-sudo mkdir /export/apps/bcftools/1.3.1 +./configure --prefix=/export/apps/bcftools/1.11 --with-htslib=/export/apps/htslib/1.11 
-$ HTSDIR=/export/apps/htslib/1.3.2 make +$ make 
-$ make prefix=/export/apps/bcftools/1.3.1 install +$ sudo mkdir -p /export/apps/bcftools/1.11 
-$ sudo chown -R root:root /export/apps/bcftools/1.3.1 +$ sudo chown aorth /export/apps/bcftools/1.11 
-</code>+$ make install 
 +$ sudo chown -R root:root /export/apps/bcftools/1.11</code> 
 + 
 +This links bcftools against a system-wide installation of htslib/1.11.
bcftools-software.txt · Last modified: 2021/09/05 10:51 by aorth