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bcftools-software [2018/06/01 19:17]
aorth
bcftools-software [2021/02/21 09:50] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.8+  * Latest Version: 1.11
   * Added: September, 2015   * Added: September, 2015
-  * Updated: June2018+  * Updated: February2021
   * Link: https://samtools.github.io/bcftools   * Link: https://samtools.github.io/bcftools
  
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 Load one version into your environment: Load one version into your environment:
-<code>$ module load bcftools/1.8</code>+<code>$ module load bcftools/1.11</code>
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/samtools/bcftools/releases/download/1.8/bcftools-1.8.tar.bz2 +$ wget https://github.com/samtools/bcftools/releases/download/1.11/bcftools-1.11.tar.bz2 
-$ tar xf bcftools-1.8.tar.bz2 +$ tar xf bcftools-1.11.tar.bz2  
-$ cd bcftools-1.8 +$ cd bcftools-1.11 
-$ ./configure --prefix=/export/apps/bcftools/1.--with-htslib=/export/apps/htslib/1.8+$ ./configure --prefix=/export/apps/bcftools/1.11 --with-htslib=/export/apps/htslib/1.11
 $ make $ make
-$ sudo mkdir /export/apps/bcftools/1.8 +$ sudo mkdir -p /export/apps/bcftools/1.11 
-$ sudo chown -R aorth:aorth /export/apps/bcftools/1.8+$ sudo chown aorth /export/apps/bcftools/1.11
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/bcftools/1.8</code>+$ sudo chown -R root:root /export/apps/bcftools/1.11</code>
  
-This links bcftools against a system-wide installation of htslib/1.8.+This links bcftools against a system-wide installation of htslib/1.11.
bcftools-software.txt · Last modified: 2021/02/21 09:50 by aorth