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bbmap-software [2019/09/11 15:59] (current)
aorth created
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 +====== BBMap ======
 +BBMap is a splice-aware global aligner for DNA and RNA sequencing reads. It is part of the BBTools project and includes other tools like BBDuk.
  
 +===== Information =====
 +
 +  * Version: 38.67
 +  * Added: September, 2019
 +  * Link: https://​jgi.doe.gov/​data-and-tools/​bbtools/​bb-tools-user-guide/​bbmap-guide
 +
 +===== Usage =====
 +
 +See versions of bbmap which are available:
 +<​code>​$ module avail bbmap</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load bbmap/38.67
 +$ bbmap.sh</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp/
 +$ wget '​https://​downloads.sourceforge.net/​project/​bbmap/​BBMap_38.67.tar.gz?​r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbbmap%2Ffiles%2Flatest%2Fdownload&​ts=1568205639'​ -O BBMap_38.67.tar.gz
 +$ tar xf BBMap_38.67.tar.gz
 +$ sudo mkdir -p /​export/​apps/​bbmap/​38.67
 +$ sudo cp -r bbmap/* /​export/​apps/​bbmap/​38.67</​code>​
bbmap-software.txt · Last modified: 2019/09/11 15:59 by aorth