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--- bbmap-software [2019/09/11 12:59]
aorth created
+++ bbmap-software [2020/04/23 10:34] (current)
aorth
@@ Line 16: / Line 16: @@
 <code>$ module load bbmap/38.67
 $ bbmap.sh</code>
+**Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the ''t='' flag. Please set this to a number that matches the number of CPUs you requested in your SLURM allocation. See [[https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/|the documentation]] for more information.
 ===== Installation ======

ILRI Research Computing