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bbmap-software

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BBMap

BBMap is a splice-aware global aligner for DNA and RNA sequencing reads. It is part of the BBTools project and includes other tools like BBDuk.

Information

Usage

See versions of bbmap which are available:

$ module avail bbmap

Load one version into your environment and run it:

$ module load bbmap/38.67
$ bbmap.sh

Installation

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget 'https://downloads.sourceforge.net/project/bbmap/BBMap_38.67.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbbmap%2Ffiles%2Flatest%2Fdownload&ts=1568205639' -O BBMap_38.67.tar.gz
$ tar xf BBMap_38.67.tar.gz
$ sudo mkdir -p /export/apps/bbmap/38.67
$ sudo cp -r bbmap/* /export/apps/bbmap/38.67
bbmap-software.txt · Last modified: 2019/09/11 15:59 by aorth