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barrnap-software [2019/09/29 21:37] (current)
aorth created
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 +====== barrnap ======
  
 +Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,​23S,​16S),​ archaea (5S,​5.8S,​23S,​16S),​ metazoan mitochondria (12S,16S) and eukaryotes (5S,​5.8S,​28S,​18S).
 +
 +It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new nhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.
 +
 +===== Information =====
 +
 +  * Version: 0.9
 +  * Added: September, 2019
 +  * Link: https://​github.com/​tseemann/​barrnap
 +
 +===== Usage =====
 +
 +See which versions of barrnap are available:
 +<​code>​$ module avail barrnap</​code>​
 +
 +Load one version into your environment and run it:
 +<​code>​$ module load barrnap/0.9
 +$ barrnap</​code>​
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​github.com/​tseemann/​barrnap/​archive/​0.9.tar.gz
 +$ tar xf 0.9.tar.gz
 +$ cd barrnap-0.9
 +$ sudo mkdir -p /​export/​apps/​barrnap/​0.9
 +$ sudo cp -r bin db examples LICENSE* /​export/​apps/​barrnap/​0.9/</​code>​
barrnap-software.txt · Last modified: 2019/09/29 21:37 by aorth