User Tools

Site Tools


This is an old revision of the document!

Table of Contents


Bamtools provides C++ API & command-line toolkit for working with BAM data.



See which versions of bamtools are available:

$ module avail bamtools

Load one version into your environment and run it:

$ module load bamtools/2.5.1
$ bamtools/code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget
$ unzip
$ cd bamtools-2.5.1
$ mkdir build
$ cd build
$ sudo yum install cmake3
$ sudo mkdir -p /export/apps/bamtools/2.5.1
$ sudo chown aorth /export/apps/bamtools/2.5.1
$ cmake3 -DCMAKE_INSTALL_PREFIX=/export/apps/bamtools/2.5.1 ..
$ make install
$ sudo chown -R root:root /export/apps/bamtools/2.5.1
bamtools-software.1514237115.txt.gz · Last modified: 2017/12/25 21:25 by aorth