User Tools

Site Tools


bam-readcount-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

bam-readcount-software [2017/05/23 18:45] (current)
aorth created
Line 1: Line 1:
 +====== bam-readcount ======
 +The purpose of this program is to generate metrics at single nucleotide positions.
 +
 +===== Information =====
 +
 +  * Version: 0.8.0
 +  * Added: May, 2017
 +  * Link: https://​github.com/​genome/​bam-readcount
 +
 +===== Usage =====
 +
 +See which versions of bam-readcount are available:
 +<​code>​$ module avail bam-readcount
 +</​code>​
 +
 +Load bamtools
 +<​code>​$ module load bam-readcount/​0.8.0</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ git clone https://​github.com/​genome/​bam-readcount.git
 +$ cd bam-readcount
 +$ git checkout v0.8.0
 +$ mkdir build
 +$ cd build
 +$ cmake ..
 +$ make
 +$ sudo mkdir -p /​export/​apps/​bam-readcount/​0.8.0
 +$ sudo cp bin/​bam-readcount /​export/​apps/​bam-readcount/​0.8.0</​code>​
  
bam-readcount-software.txt · Last modified: 2017/05/23 18:45 by aorth