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admixture-software [2016/01/12 09:31] (current)
joguya created
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 +====== ADMIXTURE ======
 +ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.
 +
 +===== Information =====
 +
 +  * Version: 1.3.0
 +  * Added: January, 2016
 +  * Link: https://​www.genetics.ucla.edu/​software/​admixture/​index.html
 +
 +===== Usage =====
 +
 +See versions of admixture which are available:
 +<​code>​$ module avail admixture</​code>​
 +
 +Load and run admixture:
 +<​code>​$ module load admixture/​1.3.0
 +$ admixture</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​$ cd /tmp
 +$ wget https://​www.genetics.ucla.edu/​software/​admixture/​binaries/​admixture_linux-1.3.0.tar.gz
 +$ tar -xvf admixture_linux-1.3.0.tar.gz
 +$ sudo mkdir /​export/​apps/​admixture/​1.3.0/​
 +$ cd admixture_linux-1.3.0/​
 +$ sudo cp -r . /​export/​apps/​admixture/​1.3.0/​
 +</​code>​
  
admixture-software.txt · Last modified: 2016/01/12 09:31 by joguya