User Tools

Site Tools


admixture-software

ADMIXTURE

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.

Information

Usage

See versions of admixture which are available:

$ module avail admixture

Load and run admixture:

$ module load admixture/1.3.0
$ admixture

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://www.genetics.ucla.edu/software/admixture/binaries/admixture_linux-1.3.0.tar.gz
$ tar -xvf admixture_linux-1.3.0.tar.gz
$ sudo mkdir /export/apps/admixture/1.3.0/
$ cd admixture_linux-1.3.0/
$ sudo cp -r . /export/apps/admixture/1.3.0/
admixture-software.txt · Last modified: 2016/01/12 09:31 by joguya