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adapterremoval-software [2014/09/19 09:56] (current)
aorth created
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 +====== AdapterRemoval ======
 +AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.
  
 +===== Information =====
 +
 +  * Version: 1.5.4
 +  * Added: September, 2014
 +  * Link: AdapterRemoval
 +
 +===== Usage =====
 +
 +=== See versions of AdapterRemoval which are available ===
 +<​code>​module avail AdapterRemoval</​code>​
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:​
 +
 +<​code>​git clone https://​github.com/​slindgreen/​AdapterRemoval
 +cd AdapterRemoval
 +tar xf AdapterRemoval-1.5.4.tar.gz
 +cd AdapterRemoval-1.5.4
 +scl enable devtoolset-1.1 bash
 +make
 +sudo mkdir -p /​export/​apps/​AdapterRemoval/​1.5.4/​bin
 +sudo mkdir -p /​export/​apps/​AdapterRemoval/​1.5.4/​share/​man/​man1
 +sudo cp AdapterRemoval /​export/​apps/​AdapterRemoval/​1.5.4/​bin
 +sudo cp AdapterRemoval.1 /​export/​apps/​AdapterRemoval/​1.5.4/​share/​man/​man1</​code>​
adapterremoval-software.txt · Last modified: 2014/09/19 09:56 by aorth