AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.
See versions of AdapterRemoval which are available:
$ module avail AdapterRemoval
Load one version into your environment and run it:
$ module load AdapterRemoval/2.3.1 $ AdapterRemoval
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/MikkelSchubert/adapterremoval/archive/v2.3.1.tar.gz $ tar xf v2.3.1.tar.gz $ cd adapterremoval-2.3.1 $ make $ sudo mkdir -p /export/apps/AdapterRemoval/2.3.1 $ sudo chown aorth /export/apps/AdapterRemoval/2.3.1 $ make PREFIX=/export/apps/AdapterRemoval/2.3.1 install $ sudo chown -R root:root /export/apps/AdapterRemoval/2.3.1