AdapterRemoval removes residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.
module avail AdapterRemoval
Notes from the sysadmin during installation:
git clone https://github.com/slindgreen/AdapterRemoval cd AdapterRemoval tar xf AdapterRemoval-1.5.4.tar.gz cd AdapterRemoval-1.5.4 scl enable devtoolset-1.1 bash make sudo mkdir -p /export/apps/AdapterRemoval/1.5.4/bin sudo mkdir -p /export/apps/AdapterRemoval/1.5.4/share/man/man1 sudo cp AdapterRemoval /export/apps/AdapterRemoval/1.5.4/bin sudo cp AdapterRemoval.1 /export/apps/AdapterRemoval/1.5.4/share/man/man1