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abyss-software

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Table of Contents

Abyss

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler.

Information

Usage

See versions of abyss which are available

module avail abyss

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/bcgsc/abyss/releases/download/1.5.2/abyss-1.5.2.tar.gz
$ tar xf abyss-1.5.2.tar.gz 
$ cd abyss-1.5.2
$ scl enable devtoolset-2 bash
$ mkdir /tmp/abyss-build
$ cd /tmp/abyss-build
$ /tmp/abyss-1.5.2/configure --prefix=/export/apps/abyss/1.5.2 --with-boost=/export/apps/boost/1.50.0/include --with-mpi=/export/apps/openmpi/1.8.2
$ make -j4
$ sudo mkdir -p /export/apps/abyss/1.5.2
$ sudo chown aorth /export/apps/abyss/1.5.2
$ make install
$ sudo chown -R root:root /export/apps/abyss/1.5.2
abyss-software.1426944282.txt.gz · Last modified: 2015/03/21 16:24 by aorth