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abyss-software

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Table of Contents

Abyss

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

Information

Usage

See versions of abyss which are available

module avail abyss

Installation

Notes from the sysadmin during installation:

wget https://github.com/bcgsc/abyss/releases/download/1.5.1/abyss-1.5.1.tar.gz
tar zxf abyss-1.5.1.tar.gz
cd abyss-1.5.1
scl enable devtoolset-1.1 bash
mkdir /tmp/abyss-build
cd /tmp/abyss-build
~/src/abyss-1.5.1/configure --prefix=/export/apps/abyss/1.5.1 --with-boost=/export/apps/boost/1.50.0/include/
sudo mkdir -p /export/apps/abyss/1.5.1
sudo chown aorth /export/apps/abyss/1.5.1
sudo chown -R root:root /export/apps/abyss/1.5.1
abyss-software.1402437024.txt.gz · Last modified: 2014/06/11 00:50 by aorth