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abyss-software
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| Both sides previous revision Previous revision Next revision | Previous revision Last revision Both sides next revision | ||
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abyss-software [2015/06/10 11:50] joguya |
abyss-software [2018/11/17 20:35] aorth |
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| Line 4: | Line 4: | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: | + | * Version: |
| * Added: August, 2013 | * Added: August, 2013 | ||
| - | * Updated: | + | * Updated: |
| - | * K-mer size: 64 (default at compile time) | + | * K-mer size: 128 (default at compile time) |
| * Link: http:// | * Link: http:// | ||
| Line 14: | Line 14: | ||
| See versions of abyss which are available: | See versions of abyss which are available: | ||
| < | < | ||
| + | |||
| + | Load one version into your environment and run it: | ||
| + | < | ||
| + | $ abyss-pe help</ | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Line 19: | Line 23: | ||
| < | < | ||
| - | $ wget https://github.com/bcgsc/ | + | $ wget http://www.bcgsc.ca/ |
| - | $ tar -xvf abyss-1.9.0.tar.gz | + | $ tar xf abyss-2.1.4.tar.gz |
| - | $ cd abyss-1.9.0 | + | $ cd abyss-2.1.4 |
| - | $ scl enable devtoolset-2 bash | + | $ sudo yum install sparsehash-devel.x86_64 openmpi-devel.x86_64 |
| - | $ sudo mkdir / | + | $ ./configure --prefix=/ |
| - | $ sudo chown joguya: | + | |
| - | $ CC=clang | + | |
| $ make -j4 | $ make -j4 | ||
| + | $ sudo mkdir -p / | ||
| + | $ sudo chown aorth / | ||
| $ make install | $ make install | ||
| - | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
| - | </ | + | $ sudo yum remove sparsehash-devel.x86_64 openmpi-devel.x86_64</ |
abyss-software.txt · Last modified: 2019/07/10 14:25 by aorth
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