====== nanopolish ======
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more (see Nanopolish modules, below).

===== Information =====

  * Version: 0.10.2
  * Added: November, 2018
  * Link: https://github.com/jts/nanopolish

===== Usage =====

See versions which are available:
<code>$ module avail nanopolish</code>

Load one version into your environment and run it:
<code>$ module load nanopolish/0.10.2
$ nanopolish help</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ git clone --recursive https://github.com/jts/nanopolish.git
$ cd nanopolish
$ git checkout v0.10.2
$ make
$ sudo mkdir -p /export/apps/nanopolish/0.10.2
$ sudo chown -R aorth:aorth /export/apps/nanopolish/0.10.2
$ cp -r bin docs nanopolish nanopolish_test scripts README.md LICENSE /export/apps/nanopolish/0.10.2
$ python3.6m -m venv /export/apps/nanopolish/0.10.2
$ source /export/apps/nanopolish/0.10.2/bin/activate
$ pip3 install biopython pysam
$ sudo chown -R root:root /export/apps/nanopolish/0.10.2</code>