====== MEGAHIT ======
single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.

===== Information =====

  * Version: 1.1.4
  * Added: July, 2017
  * Updated: November, 2018
  * Link: https://github.com/voutcn/megahit

===== Usage =====

See versions of megahit which are available:
<code>$ module avail megahit</code>

Load one version into your environment and run it:
<code>$ module load megahit/1.1.4
$ megahit -h</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/voutcn/megahit/releases/download/v1.1.4/megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin.tar.gz
$ tar xf megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin.tar.gz
$ sudo mkdir -p /export/apps/megahit/1.1.4/bin
$ sudo cp megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin/megahit* /export/apps/megahit/1.1.4/bin</code>