====== Beagle ======
BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.

===== Information =====

  * Latest Version: 3.1.2
  * Added: August, 2015
  * Updated: September, 2019
  * Link: https://github.com/beagle-dev/beagle-lib
  
===== Usage =====

See which versions of beagle are available:
<code>$ module avail beagle</code>

Load one version into your environment:
<code>$ module load beagle/3.1.2</code>

Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]].

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz
$ tar xf v3.1.2.tar.gz 
$ cd beagle-lib-3.1.2
$ scl enable devtoolset-7 bash
$ ./autogen.sh
$ ./configure --prefix=/export/apps/beagle/3.1.2
$ sudo mkdir -p /export/apps/beagle/3.1.2
$ sudo chown aorth /export/apps/beagle/3.1.2
$ make install
$ sudo chown -R root:root /export/apps/beagle/3.1.2</code>